Transcript: LINC02027:16

Basic information

LNCipedia transcript ID: LINC02027:16 
HGNC Gene Symbol: LINC02027    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2027
Ensembl Gene ID: ENSG00000243694
Ensembl Transcript ID: ENST00000482617
RefSeq ID: NR_132411
Location (hg38): chr3:80993868-81095647
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 596 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005550; ENST00000482617; ENST00000482617.1; RP11-6B4.1-001; OTTHUMT00000352644.1; NONHSAT090605; NR_132411.1
Alternative gene names: XLOC_002717; linc-CADM2-7; ENSG00000243694; RP11-6B4.1; ENSG00000243694.1; OTTHUMG00000158949.1; ENSG00000243694.2; LINC02027; LOC728290


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.2519 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02027:16 no no no no

Available literature

  1. Zhang (2017), Decreased expression of long non-coding RNA LOC728290 in human hepatocellular carcinoma., Oncol Lett


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ROBO2-5:3
3.1 lnc-ROBO2-5:3
4.0 lnc-ROBO2-5:3
4.1 lnc-ROBO2-5:3
5.0 lnc-ROBO2-5:3
5.1 LINC02027:5
5.2 LINC02027:16