Transcript: lnc-RNF182-3:1

Basic information

LNCipedia transcript ID: lnc-RNF182-3:1 
LNCipedia gene ID: lnc-RNF182-3
Ensembl Gene ID: ENSG00000272209
Ensembl Transcript ID: ENST00000607518
Location (hg38): chr6:13825432-13826574
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1143 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607518.1
Alternative gene names: ENSG00000272209.1; RP3-500L14.2; AL023583.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.103 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF182-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RNF182-3:1
4.0 lnc-RNF182-3:1
4.1 lnc-RNF182-3:1
5.0 lnc-RNF182-3:1
5.1 lnc-PRPF4B-149:5
5.2 lnc-RNF182-3:1