Transcript: LINC01871:11

Basic information

LNCipedia transcript ID: LINC01871:11 
HGNC Gene Symbol: LINC01871    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1871
Ensembl Gene ID: ENSG00000235576
Ensembl Transcript ID: ENST00000417930
Location (hg38): chr2:7725801-7730705
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 243 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002811; ENST00000417930; ENST00000417930.1; AC092580.4-001; OTTHUMT00000323245.1
Alternative gene names: XLOC_001331; linc-ID2-3; ENSG00000235576; AC092580.4; ENSG00000235576.1; OTTHUMG00000151591.1; LINC01871


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -261.2971 non-coding 
CPAT coding probability 5.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01871:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RNF144A-3:2
3.1 lnc-RNF144A-3:2
4.0 lnc-RNF144A-3:2
4.1 lnc-RNF144A-3:2
5.0 lnc-RNF144A-3:2
5.1 LINC01871:5
5.2 LINC01871:11