Transcript: lnc-RHBG-1:1

Basic information

LNCipedia transcript ID: lnc-RHBG-1:1 
LNCipedia gene ID: lnc-RHBG-1
Ensembl Gene ID: ENSG00000237390
Ensembl Transcript ID: ENST00000451362
Location (hg38): chr1:156388226-156395609
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5586 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451362; TCONS_00000317; ENST00000451362.1; RP11-139I14.2-001; OTTHUMT00000075987.1; NONHSAT006847
Alternative gene names: ENSG00000237390; XLOC_000423; linc-TTC24-2; RP11-139I14.2; ENSG00000237390.1; OTTHUMG00000031021.1; AL139130.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.9037 non-coding 
CPAT coding probability 26.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RHBG-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RHBG-1:1
3.1 lnc-RHBG-1:1
4.0 lnc-RHBG-1:1
4.1 lnc-RHBG-1:1
5.0 lnc-RHBG-1:1
5.1 lnc-PMF1-BGLAP-4:1
5.2 lnc-RHBG-1:1