Transcript: lnc-GDF11-1:4

Basic information

LNCipedia transcript ID: lnc-GDF11-1:4 
LNCipedia gene ID: lnc-GDF11-1
Location (hg38): chr12:55729104-55730683
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1274 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000552576.1; RP11-644F5.11-001; OTTHUMT00000407841.1
Alternative gene names: ENSG00000258056.1; RP11-644F5.11; OTTHUMG00000170187.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.5304 non-coding 
CPAT coding probability 4.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GDF11-1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RDH5-1:1
4.0 lnc-RDH5-1:1
4.1 lnc-GDF11-1:4
5.0 lnc-GDF11-1:4
5.1 lnc-BLOC1S1-1:3
5.2 lnc-GDF11-1:4