Transcript: LINC01741:3

Basic information

LNCipedia transcript ID: LINC01741:3 
HGNC Gene Symbol: LINC01741    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1741
Ensembl Gene ID: ENSG00000236720
Ensembl Transcript ID: ENST00000427173
RefSeq ID: NR_110722
Location (hg38): chr1:177700524-177710330
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1666 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000341; ENST00000427173; ENST00000427173.1; RP11-63B19.1-001; OTTHUMT00000098156.1; NONHSAT007796; NR_110722; NR_110722.1
Alternative gene names: XLOC_000473; linc-RASAL2-1; ENSG00000236720; RP11-63B19.1; ENSG00000236720.1; OTTHUMG00000040863.1; LINC01741; LOC101928778


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.1372 non-coding 
CPAT coding probability 1.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01741:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASAL2-1:1
3.1 lnc-RASAL2-2:1
4.0 lnc-RASAL2-2:1
4.1 lnc-RASAL2-2:1
5.0 lnc-RASAL2-2:1
5.1 LINC01741:2
5.2 LINC01741:3