Transcript: lnc-RAET1L-1:1

Basic information

LNCipedia transcript ID: lnc-RAET1L-1:1 
LNCipedia gene ID: lnc-RAET1L-1
Ensembl Gene ID: ENSG00000235972
Ensembl Transcript ID: ENST00000456346
Location (hg38): chr6:150040547-150042033
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 880 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011594; ENST00000456346; ENST00000456346.1; RP11-472G23.10-001; OTTHUMT00000042679.1; NONHSAT115531
Alternative gene names: XLOC_005876; linc-RAET1L; ENSG00000235972; RP11-472G23.10; ENSG00000235972.1; OTTHUMG00000015812.1; AL355497.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.4131 non-coding 
CPAT coding probability 2.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAET1L-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAET1L-1:1
3.1 lnc-RAET1L-1:1
4.0 lnc-RAET1L-1:1
4.1 lnc-RAET1L-1:1
5.0 lnc-RAET1L-1:1
5.1 lnc-RAET1G-6:1
5.2 lnc-RAET1L-1:1