Transcript: lnc-RAB4A-1:2

Basic information

LNCipedia transcript ID: lnc-RAB4A-1:2 
LNCipedia gene ID: lnc-RAB4A-1
Ensembl Gene ID: ENSG00000237481
Ensembl Transcript ID: ENST00000418348
Location (hg38): chr1:229319403-229323087
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 640 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418348.1; RP4-803J11.2-001; OTTHUMT00000091838.1; NONHSAT010080
Alternative gene names: ENSG00000237481.1; RP4-803J11.2; OTTHUMG00000037662.1; AL117350.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.7887 non-coding 
CPAT coding probability 7.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RAB4A-1:2 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.
  2. Zhou (2015), Identification and validation of potential prognostic lncRNA biomarkers for predicting survival in patients with multiple myeloma., J. Exp. Clin. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RAB4A-1:2
4.0 lnc-RAB4A-1:2
4.1 lnc-RAB4A-1:2
5.0 lnc-RAB4A-1:2
5.1 lnc-ZNF678-59:2
5.2 lnc-RAB4A-1:2