Transcript: lnc-PRDM11-2:1

Basic information

LNCipedia transcript ID: lnc-PRDM11-2:1 
LNCipedia gene ID: lnc-PRDM11-2
Location (hg38): chr11:45008281-45041696
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 434 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019285; NONHSAT019003
Alternative gene names: XLOC_009118; linc-PRDM11-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -471.8803 non-coding 
CPAT coding probability 7.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM11-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM11-1:1
3.1 lnc-PRDM11-2:1
4.0 lnc-PRDM11-2:1
4.1 lnc-PRDM11-2:1
5.0 lnc-PRDM11-2:1
5.1 lnc-OR5L2-96:1
5.2 lnc-PRDM11-2:1