Transcript: lnc-PPP4C-10:4

Basic information

LNCipedia transcript ID: lnc-PPP4C-10:4 
LNCipedia gene ID: lnc-PPP4C-10
Ensembl Gene ID: ENSG00000250616
Ensembl Transcript ID: ENST00000515455
Location (hg38): chr16:30096430-30104116
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1650 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515455.2; RP11-455F5.3-001; OTTHUMT00000434052.1
Alternative gene names: ENSG00000250616.2; RP11-455F5.3; OTTHUMG00000176855.1; AC012645.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.0323 non-coding 
CPAT coding probability 16.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PPP4C-10:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP4C-2:1
4.0 lnc-PPP4C-2:1
4.1 lnc-PPP4C-2:1
5.0 lnc-PPP4C-2:1
5.1 lnc-PRRT2-34:4
5.2 lnc-PPP4C-10:4