Transcript: LINC01965:17

Basic information

LNCipedia transcript ID: LINC01965:17 
HGNC Gene Symbol: LINC01965    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1965
Ensembl Gene ID: ENSG00000256637
Ensembl Transcript ID: ENST00000412112
Location (hg38): chr2:104053502-104059256
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1378 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002717; ENST00000412112; ENST00000412112.3; RP11-76I14.1-001; OTTHUMT00000396146.2; NONHSAT072893
Alternative gene names: XLOC_001600; linc-POU3F3-7; ENSG00000256637; RP11-76I14.1; ENSG00000256637.1; OTTHUMG00000167762.2; ENSG00000256637.2; ENSG00000256637.6; LINC01965


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.9448 non-coding 
CPAT coding probability 3.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01965:17 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POU3F3-6:4
3.1 lnc-POU3F3-6:4
4.0 lnc-POU3F3-6:4
4.1 lnc-POU3F3-6:4
5.0 lnc-POU3F3-6:4
5.1 LINC01965:9
5.2 LINC01965:17