Transcript: LINC01965:16

Basic information

LNCipedia transcript ID: LINC01965:16 
HGNC Gene Symbol: LINC01965    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1965
Ensembl Gene ID: ENSG00000256637
Ensembl Transcript ID: ENST00000545549
Location (hg38): chr2:104051975-104077523
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000545549; ENST00000545549.1; RP11-76I14.1-002; OTTHUMT00000396145.1; NONHSAT072892
Alternative gene names: ENSG00000256637; RP11-76I14.1; ENSG00000256637.1; OTTHUMG00000167762.2; ENSG00000256637.2; ENSG00000256637.6; LINC01965


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.3245 non-coding 
CPAT coding probability 3.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01965:16 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POU3F3-6:3
3.1 lnc-POU3F3-6:3
4.0 lnc-POU3F3-6:3
4.1 lnc-POU3F3-6:3
5.0 lnc-POU3F3-6:3
5.1 LINC01965:8
5.2 LINC01965:16