Transcript: LINC01965:13

Basic information

LNCipedia transcript ID: LINC01965:13 
HGNC Gene Symbol: LINC01965    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1965
Ensembl Gene ID: ENSG00000256637
Ensembl Transcript ID: ENST00000544869
Location (hg38): chr2:103874331-104077778
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544869; ENST00000544869.1; RP11-76I14.1-004; OTTHUMT00000396150.1; NONHSAT072887; ENST00000544869.5
Alternative gene names: ENSG00000256637; RP11-76I14.1; ENSG00000256637.1; OTTHUMG00000167762.2; ENSG00000256637.2; ENSG00000256637.6; LINC01965


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.1138 non-coding 
CPAT coding probability 39.40% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01965:13 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POU3F3-6:2
3.1 lnc-POU3F3-6:2
4.0 lnc-POU3F3-6:2
4.1 lnc-POU3F3-6:2
5.0 lnc-POU3F3-6:2
5.1 LINC01965:5
5.2 LINC01965:13