Transcript: lnc-PRRT1B-1:1

Basic information

LNCipedia transcript ID: lnc-PRRT1B-1:1 
LNCipedia gene ID: lnc-PRRT1B-1
Ensembl Gene ID: ENSG00000236687
Ensembl Transcript ID: ENST00000444708
Location (hg38): chr9:131816192-131820988
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 829 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015769; ENST00000444708; ENST00000444708.1; RP11-323H21.3-001; OTTHUMT00000054768.1; NONHSAT135240
Alternative gene names: XLOC_007592; linc-NTNG2; ENSG00000236687; RP11-323H21.3; ENSG00000236687.1; OTTHUMG00000020831.1; AL160271.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.9198 non-coding 
CPAT coding probability 4.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRRT1B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POMT1-1:1
3.1 lnc-POMT1-1:1
4.0 lnc-POMT1-1:1
4.1 lnc-POMT1-1:1
5.0 lnc-POMT1-1:1
5.1 lnc-RPL7A-23:1
5.2 lnc-PRRT1B-1:1