Transcript: LINC02161:3

Basic information

LNCipedia transcript ID: LINC02161:3 
HGNC Gene Symbol: LINC02161    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2161
Ensembl Gene ID: ENSG00000250437
Ensembl Transcript ID: ENST00000503691
Location (hg38): chr5:89581209-89677701
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 420 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009456; ENST00000503691; ENST00000503691.1; RP11-116A1.1-001; OTTHUMT00000370015.1; NONHSAT102716
Alternative gene names: XLOC_004464; linc-POLR3G-4; ENSG00000250437; RP11-116A1.1; ENSG00000250437.1; OTTHUMG00000162669.1; LINC02161


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.1126 non-coding 
CPAT coding probability 12.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02161:3 no no no no

Available literature

  1. Wang (2017), Identification of new susceptibility loci for gastric non-cardia adenocarcinoma: pooled results from two Chinese genome-wide association studies., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POLR3G-4:1
3.1 lnc-POLR3G-4:1
4.0 lnc-POLR3G-4:1
4.1 lnc-POLR3G-4:1
5.0 lnc-POLR3G-4:1
5.1 LINC02161:2
5.2 LINC02161:3