Transcript: lnc-PNPLA5-2:1

Basic information

LNCipedia transcript ID: lnc-PNPLA5-2:1 
LNCipedia gene ID: lnc-PNPLA5-2
Location (hg38): chr22:43983096-43984285
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 548 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003bgl_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.0953 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PNPLA5-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PNPLA5-2:1
4.0 lnc-PNPLA5-2:1
4.1 lnc-PNPLA5-2:1
5.0 lnc-PNPLA5-2:1
5.1 lnc-TCF20-25:1
5.2 lnc-PNPLA5-2:1