Transcript: lnc-GATB-2:3

Basic information

LNCipedia transcript ID: lnc-GATB-2:3 
LNCipedia gene ID: lnc-GATB-2
Location (hg38): chr4:151904937-151910170
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 640 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009147; NONHSAT098774
Alternative gene names: XLOC_004124; linc-PET112L-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.7317 non-coding 
CPAT coding probability 2.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GATB-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PET112-2:3
3.1 lnc-PET112-2:3
4.0 lnc-PET112-2:3
4.1 lnc-PET112-2:3
5.0 lnc-PET112-2:3
5.1 lnc-TMEM154-13:3
5.2 lnc-GATB-2:3