Transcript: lnc-PDZD8-8:2

Basic information

LNCipedia transcript ID: lnc-PDZD8-8:2 
LNCipedia gene ID: lnc-PDZD8-8
Ensembl Gene ID: ENSG00000277879
Ensembl Transcript ID: ENST00000614747
Location (hg38): chr10:117267116-117268668
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1553 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000614747.1
Alternative gene names: ENSG00000277879.1; RP11-129M16.4; AL391988.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 42.905 non-coding 
CPAT coding probability 5.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PDZD8-8:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PDZD8-8:2
4.1 lnc-PDZD8-8:2
5.0 lnc-PDZD8-8:2
5.1 lnc-NSMCE4A-83:1
5.2 lnc-PDZD8-8:2