Transcript: lnc-PDZD8-1:2

Basic information

LNCipedia transcript ID: lnc-PDZD8-1:2 
LNCipedia gene ID: lnc-PDZD8-1
Location (hg38): chr10:117239034-117241004
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1824 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT016512
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.4302 non-coding 
CPAT coding probability 5.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDZD8-1:2 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDZD8-1:2
4.0 lnc-PDZD8-1:2
4.1 lnc-PDZD8-1:2
5.0 lnc-PDZD8-1:2
5.1 lnc-NSMCE4A-84:7
5.2 lnc-PDZD8-1:2