Transcript: lnc-PDPK1-1:1

Basic information

LNCipedia transcript ID: lnc-PDPK1-1:1 
LNCipedia gene ID: lnc-PDPK1-1
Location (hg38): chr16:2613744-2615385
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 286 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_1261_chr16:2663744-2665386_breast
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.7014 non-coding 
CPAT coding probability 10.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PDPK1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PDPK1-1:1
4.0 lnc-PDPK1-1:1
4.1 lnc-PDPK1-1:1
5.0 lnc-PDPK1-1:1
5.1 lnc-DNASE1L2-40:1
5.2 lnc-PDPK1-1:1