Transcript: lnc-OR4E1-1:2

Basic information

LNCipedia transcript ID: lnc-OR4E1-1:2 
LNCipedia gene ID: lnc-OR4E1-1
Ensembl Gene ID: ENSG00000248358
Ensembl Transcript ID: ENST00000542992
Location (hg38): chr14:21714795-21716262
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 570 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542992; ENST00000542992.1; AE000658.31-001; OTTHUMT00000401528.1; NONHSAT035704
Alternative gene names: ENSG00000248358; AE000658.31; ENSG00000248358.2; OTTHUMG00000168893.1; AC243972.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.4164 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-OR4E1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OR10G2-1:1
3.1 lnc-OR10G2-1:1
4.0 lnc-OR10G2-1:1
4.1 lnc-OR10G2-1:1
5.0 lnc-OR10G2-1:1
5.1 lnc-OR4E1-1:1
5.2 lnc-OR4E1-1:2