Transcript: lnc-NABP1-6:1

Basic information

LNCipedia transcript ID: lnc-NABP1-6:1 
LNCipedia gene ID: lnc-NABP1-6
Ensembl Gene ID: ENSG00000229395
Ensembl Transcript ID: ENST00000414394
Location (hg38): chr2:192629919-192645706
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 565 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003068; ENST00000414394; ENST00000414394.1; AC013401.1-001; OTTHUMT00000334885.1; NONHSAT076149
Alternative gene names: XLOC_001792; linc-SLC39A10-6; ENSG00000229395; AC013401.1; ENSG00000229395.1; OTTHUMG00000154343.1; AC062039.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -122.458 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NABP1-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OBFC2A-4:1
3.1 lnc-OBFC2A-6:1
4.0 lnc-OBFC2A-6:1
4.1 lnc-OBFC2A-6:1
5.0 lnc-OBFC2A-6:1
5.1 lnc-FAM171B-45:1
5.2 lnc-NABP1-6:1