Transcript: lnc-NPAS1-6:1

Basic information

LNCipedia transcript ID: lnc-NPAS1-6:1 
LNCipedia gene ID: lnc-NPAS1-6
Location (hg38): chr19:46965180-46966133
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 954 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr19_6937_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.3653 non-coding 
CPAT coding probability 6.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPAS1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPAS1-6:1
4.0 lnc-NPAS1-6:1
4.1 lnc-NPAS1-6:1
5.0 lnc-NPAS1-6:1
5.1 lnc-BICRA-32:1
5.2 lnc-NPAS1-6:1