Transcript: lnc-RNF113A-5:1

Basic information

LNCipedia transcript ID: lnc-RNF113A-5:1 
LNCipedia gene ID: lnc-RNF113A-5
Location (hg38): chrX:119921261-119922840
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 810 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00017085; ENST00000455986.1; RP3-327A19.5-001; OTTHUMT00000058079.1; NONHSAT138349
Alternative gene names: XLOC_008220; linc-RNF113A; ENSG00000227285.1; RP3-327A19.5; OTTHUMG00000022286.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.163 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RNF113A-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKAP-1:1
3.1 lnc-NKAP-1:1
4.0 lnc-NKAP-1:1
4.1 lnc-NKAP-1:1
5.0 lnc-NKAP-1:1
5.1 lnc-CT47A8-15:1
5.2 lnc-RNF113A-5:1