Transcript: lnc-NBN-1:20

Basic information

LNCipedia transcript ID: lnc-NBN-1:20 
LNCipedia gene ID: lnc-NBN-1
Location (hg38): chr8:89611482-89628297
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 852 bp
Exons: 4
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1360:2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -196.9308 non-coding 
CPAT coding probability 16.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBN-1:20 no no no no

Available literature

  1. Wu (2015), Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NBN-1:20
4.1 lnc-NBN-1:20
5.0 lnc-NBN-1:20
5.1 lnc-ZNF706-219:33
5.2 lnc-NBN-1:20