Transcript: lnc-NBN-1:15

Basic information

LNCipedia transcript ID: lnc-NBN-1:15 
LNCipedia gene ID: lnc-NBN-1
RefSeq ID: NR_125822
Location (hg38): chr8:89717399-89757711
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1601 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125822; NR_125822.1
Alternative gene names: LOC101929709


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -71.3292 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBN-1:15 no no no no

Available literature

  1. Wu (2015), Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBN-1:15
4.0 lnc-NBN-1:15
4.1 lnc-NBN-1:15
5.0 lnc-NBN-1:15
5.1 lnc-ZNF706-219:5
5.2 lnc-NBN-1:15