Transcript: lnc-NBN-1:11

Basic information

LNCipedia transcript ID: lnc-NBN-1:11 
LNCipedia gene ID: lnc-NBN-1
Ensembl Gene ID: ENSG00000251136
Ensembl Transcript ID: ENST00000519655
Location (hg38): chr8:89609409-89757727
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1398 bp
Exons: 7
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519655.2; ENST00000519655.6
Alternative gene names: ENSG00000251136.4; RP11-37B2.1; ENSG00000251136.8; AF117829.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.8142 non-coding 
CPAT coding probability 15.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBN-1:11 no no no no

Available literature

  1. Wu (2015), Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NBN-1:11
4.0 lnc-NBN-1:11
4.1 lnc-NBN-1:11
5.0 lnc-NBN-1:11
5.1 lnc-ZNF706-219:2
5.2 lnc-NBN-1:11