Transcript: lnc-NBN-1:1

Basic information

LNCipedia transcript ID: lnc-NBN-1:1 
LNCipedia gene ID: lnc-NBN-1
Location (hg38): chr8:89609400-89757727
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1407 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000519655; ENST00000519655.1; RP11-37B2.1-001; OTTHUMT00000375476.1; NONHSAT127611
Alternative gene names: ENSG00000251136; RP11-37B2.1; ENSG00000251136.2; OTTHUMG00000163788.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.8142 non-coding 
CPAT coding probability 15.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NBN-1:1 no no no no

Available literature

  1. Wu (2015), Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NBN-1:1
3.1 lnc-NBN-1:1
4.0 lnc-NBN-1:1
4.1 lnc-NBN-1:1
5.0 lnc-NBN-1:1
5.1 lnc-ZNF706-219:1
5.2 lnc-NBN-1:1