Transcript: lnc-MYO10-2:1

Basic information

LNCipedia transcript ID: lnc-MYO10-2:1 
LNCipedia gene ID: lnc-MYO10-2
Ensembl Gene ID: ENSG00000249199
Ensembl Transcript ID: ENST00000511182
Location (hg38): chr5:17369225-17375577
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 285 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009611; ENST00000511182; ENST00000511182.1; CTD-2139B15.5-001; OTTHUMT00000366274.1; NONHSAT100627
Alternative gene names: XLOC_004745; linc-MYO10-1; ENSG00000249199; CTD-2139B15.5; ENSG00000249199.1; OTTHUMG00000161875.1; AC026785.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.6346 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYO10-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYO10-2:1
3.1 lnc-MYO10-2:1
4.0 lnc-MYO10-2:1
4.1 lnc-MYO10-2:1
5.0 lnc-MYO10-2:1
5.1 lnc-CDH12-43:1
5.2 lnc-MYO10-2:1