Transcript: lnc-MYCN-3:1

Basic information

LNCipedia transcript ID: lnc-MYCN-3:1 
LNCipedia gene ID: lnc-MYCN-3
Ensembl Gene ID: ENSG00000226041
Ensembl Transcript ID: ENST00000444804
Location (hg38): chr2:16202430-16204226
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 637 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002833; ENST00000444804; ENST00000444804.1; AC010745.1-001; OTTHUMT00000323742.1; NONHSAT069326
Alternative gene names: XLOC_001366; linc-VSNL1-7; ENSG00000226041; AC010745.1; ENSG00000226041.1; OTTHUMG00000151746.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.8918 non-coding 
CPAT coding probability 5.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MYCN-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYCN-3:1
3.1 lnc-MYCN-3:1
4.0 lnc-MYCN-3:1
4.1 lnc-MYCN-3:1
5.0 lnc-MYCN-3:1
5.1 lnc-SNX17-134:1
5.2 lnc-MYCN-3:1