Transcript: lnc-MTRNR2L3-1:1

Basic information

LNCipedia transcript ID: lnc-MTRNR2L3-1:1 
LNCipedia gene ID: lnc-MTRNR2L3-1
Ensembl Gene ID: ENSG00000218018
Ensembl Transcript ID: ENST00000417346
Location (hg38): chr20:57384160-57393062
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1540 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417346.1; RP4-800J21.3-001; OTTHUMT00000259506.1; NONHSAT080504
Alternative gene names: ENSG00000218018.2; RP4-800J21.3; OTTHUMG00000134335.1; AL109955.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.2955 non-coding 
CPAT coding probability 54.06% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MTRNR2L3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MTRNR2L3-1:1
4.0 lnc-MTRNR2L3-1:1
4.1 lnc-MTRNR2L3-1:1
5.0 lnc-MTRNR2L3-1:1
5.1 lnc-SPATA2-90:2
5.2 lnc-MTRNR2L3-1:1