Transcript: lnc-MSX2-1:2

Basic information

LNCipedia transcript ID: lnc-MSX2-1:2 
LNCipedia gene ID: lnc-MSX2-1
Location (hg38): chr5:174820026-174826655
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 631 bp
Exons: 4
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT105252; FPKM1_group_26832_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.2464 non-coding 
CPAT coding probability 3.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSX2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MSX2-1:2
4.0 lnc-MSX2-1:2
4.1 lnc-MSX2-1:2
5.0 lnc-MSX2-1:2
5.1 lnc-ATP6V0E1-61:1
5.2 lnc-MSX2-1:2