Transcript: lnc-MSX2-1:1

Basic information

LNCipedia transcript ID: lnc-MSX2-1:1 
LNCipedia gene ID: lnc-MSX2-1
Ensembl Gene ID: ENSG00000251144
Ensembl Transcript ID: ENST00000510150
Location (hg38): chr5:174820027-174826324
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 287 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009546; ENST00000510150; ENST00000510150.1; CTD-2532K18.2-001; OTTHUMT00000371789.1; NONHSAT105253
Alternative gene names: XLOC_004651; linc-SFXN1-2; ENSG00000251144; CTD-2532K18.2; ENSG00000251144.1; OTTHUMG00000163136.1; AC113346.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.8128 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSX2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MSX2-1:1
3.1 lnc-MSX2-1:1
4.0 lnc-MSX2-1:1
4.1 lnc-MSX2-1:1
5.0 lnc-MSX2-1:1
5.1 lnc-ATP6V0E1-61:2
5.2 lnc-MSX2-1:1