Transcript: lnc-MRPS18A-1:2

Basic information

LNCipedia transcript ID: lnc-MRPS18A-1:2 
LNCipedia gene ID: lnc-MRPS18A-1
Ensembl Gene ID: ENSG00000236961
Ensembl Transcript ID: ENST00000424283
Location (hg38): chr6:43722786-43737834
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011493; ENST00000424283; ENST00000424283.1; RP1-261G23.5-001; OTTHUMT00000040694.1; NONHSAT112916
Alternative gene names: XLOC_005729; linc-MRPS18A-1; ENSG00000236961; RP1-261G23.5; ENSG00000236961.1; OTTHUMG00000014749.1; AL136131.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -218.7894 non-coding 
CPAT coding probability 3.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MRPS18A-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPS18A-1:2
3.1 lnc-MRPS18A-1:2
4.0 lnc-MRPS18A-1:2
4.1 lnc-MRPS18A-1:2
5.0 lnc-MRPS18A-1:2
5.1 lnc-NFKBIE-12:2
5.2 lnc-MRPS18A-1:2