Transcript: lnc-MFSD8-6:1

Basic information

LNCipedia transcript ID: lnc-MFSD8-6:1 
LNCipedia gene ID: lnc-MFSD8-6
Location (hg38): chr4:126562619-126955406
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 726 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000515428; ENST00000515428.1; RP11-123G5.1-001; OTTHUMT00000366006.1; NONHSAT098226
Alternative gene names: ENSG00000249178; RP11-123G5.1; ENSG00000249178.1; OTTHUMG00000161758.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.537 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MFSD8-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MFSD8-5:1
3.1 lnc-MFSD8-6:1
4.0 lnc-MFSD8-6:1
4.1 lnc-MFSD8-6:1
5.0 lnc-MFSD8-6:1
5.1 lnc-TRPC3-22:1
5.2 lnc-MFSD8-6:1