Transcript: lnc-MED10-10:1

Basic information

LNCipedia transcript ID: lnc-MED10-10:1 
LNCipedia gene ID: lnc-MED10-10
Ensembl Gene ID: ENSG00000251506
Ensembl Transcript ID: ENST00000511721
Location (hg38): chr5:4967764-4970425
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 444 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000511721; ENST00000511721.1; CTD-2247C11.2-001; OTTHUMT00000365588.1; NONHSAT100150
Alternative gene names: ENSG00000251506; CTD-2247C11.2; ENSG00000251506.1; OTTHUMG00000161648.1; AC010451.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -185.6485 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MED10-10:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MED10-7:1
3.1 lnc-MED10-10:1
4.0 lnc-MED10-10:1
4.1 lnc-MED10-10:1
5.0 lnc-MED10-10:1
5.1 lnc-IRX2-45:1
5.2 lnc-MED10-10:1