Transcript: lnc-MAN2A1-11:2

Basic information

LNCipedia transcript ID: lnc-MAN2A1-11:2 
LNCipedia gene ID: lnc-MAN2A1-11
Location (hg38): chr5:109469238-109476627
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 320 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010055; NONHSAT103144
Alternative gene names: XLOC_004502; linc-MAN2A1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -211.7792 non-coding 
CPAT coding probability 2.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAN2A1-11:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAN2A1-3:2
3.1 lnc-MAN2A1-3:2
4.0 lnc-MAN2A1-3:2
4.1 lnc-MAN2A1-3:2
5.0 lnc-MAN2A1-3:2
5.1 lnc-AP3S1-86:2
5.2 lnc-MAN2A1-11:2