Transcript: lnc-LRRTM4-1:1

Basic information

LNCipedia transcript ID: lnc-LRRTM4-1:1 
LNCipedia gene ID: lnc-LRRTM4-1
Ensembl Gene ID: ENSG00000227088
Ensembl Transcript ID: ENST00000437233
Location (hg38): chr2:77652413-77654668
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 284 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003324; ENST00000437233; ENST00000437233.1; AC084149.2-001; OTTHUMT00000328232.1; NONHSAT071830
Alternative gene names: XLOC_002172; linc-LRRTM4-1; ENSG00000227088; AC084149.2; ENSG00000227088.1; OTTHUMG00000152843.1; AC084149.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.1751 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRTM4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRTM4-1:1
3.1 lnc-LRRTM4-1:1
4.0 lnc-LRRTM4-1:1
4.1 lnc-LRRTM4-1:1
5.0 lnc-LRRTM4-1:1
5.1 lnc-GKN2-202:1
5.2 lnc-LRRTM4-1:1