Transcript: lnc-LRRC3B-1:1

Basic information

LNCipedia transcript ID: lnc-LRRC3B-1:1 
LNCipedia gene ID: lnc-LRRC3B-1
Ensembl Gene ID: ENSG00000234165
Ensembl Transcript ID: ENST00000446601
Location (hg38): chr3:26712307-26713364
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 582 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000446601; ENST00000446601.1; AC114877.3-001; OTTHUMT00000341269.1; NONHSAT088749
Alternative gene names: ENSG00000234165; AC114877.3; ENSG00000234165.1; OTTHUMG00000155686.1; AC114877.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -218.518 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC3B-1:1 no no no no

Available literature

  1. Wang (2015), Expression profile of long non-coding RNAs in pancreatic cancer and their clinical significance as biomarkers., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC3B-1:1
3.1 lnc-LRRC3B-1:1
4.0 lnc-LRRC3B-1:1
4.1 lnc-LRRC3B-1:1
5.0 lnc-LRRC3B-1:1
5.1 lnc-CMC1-14:3
5.2 lnc-LRRC3B-1:1