Transcript: LINC01644:6

Basic information

LNCipedia transcript ID: LINC01644:6 
HGNC Gene Symbol: LINC01644    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1644
Ensembl Gene ID: ENSG00000218357
Ensembl Transcript ID: ENST00000405369
RefSeq ID: NR_109967
Location (hg38): chr22:47461299-47487111
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 984 bp
Exons: 3
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109967; ENST00000405369.3; NR_109967.1
Alternative gene names: ENSG00000218357.3; LL22NC03-75H12.2; LINC01644


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.0165 non-coding 
CPAT coding probability 4.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01644:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LL22NC03-75H12.2.1-1:2
4.0 lnc-LL22NC03-75H12.2.1-1:2
4.1 lnc-LL22NC03-75H12.2.1-1:2
5.0 lnc-LL22NC03-75H12.2.1-1:2
5.1 LINC01644:3
5.2 LINC01644:6