Transcript: lnc-FRAT1-6:1

Basic information

LNCipedia transcript ID: lnc-FRAT1-6:1 
LNCipedia gene ID: lnc-FRAT1-6
Location (hg38): chr10:96985176-96985467
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 292 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: expReg_chr10_6714_+
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.6222 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FRAT1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LCOR-1:1
4.0 lnc-LCOR-1:1
4.1 lnc-LCOR-1:1
5.0 lnc-LCOR-1:1
5.1 lnc-SMC3-197:1
5.2 lnc-FRAT1-6:1