Transcript: LINC02278:3

Basic information

LNCipedia transcript ID: LINC02278:3 
HGNC Gene Symbol: LINC02278    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2278
Ensembl Gene ID: ENSG00000251635
Ensembl Transcript ID: ENST00000512170
Location (hg38): chr4:38564003-38570671
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 500 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007516; ENST00000512170; ENST00000512170.1; RP11-213G21.2-001; OTTHUMT00000360795.1; NONHSAT096039
Alternative gene names: XLOC_003512; linc-KLF3-1; ENSG00000251635; RP11-213G21.2; ENSG00000251635.1; OTTHUMG00000160485.1; LINC02278


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.8368 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02278:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF3-3:1
3.1 lnc-KLF3-3:1
4.0 lnc-KLF3-3:1
4.1 lnc-KLF3-3:1
5.0 lnc-KLF3-3:1
5.1 LINC02278:2
5.2 LINC02278:3