Transcript: lnc-WASHC5-4:3

Basic information

LNCipedia transcript ID: lnc-WASHC5-4:3 
LNCipedia gene ID: lnc-WASHC5-4
Ensembl Gene ID: ENSG00000253470
Ensembl Transcript ID: ENST00000518339
Location (hg38): chr8:125749055-125750241
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 636 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518339; ENST00000518339.1; RP11-697B24.1-001; OTTHUMT00000381469.1
Alternative gene names: ENSG00000253470; RP11-697B24.1; ENSG00000253470.1; OTTHUMG00000165024.1; AC016074.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.3539 non-coding 
CPAT coding probability 10.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WASHC5-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA0196-2:2
3.1 lnc-KIAA0196-4:2
4.0 lnc-KIAA0196-4:2
4.1 lnc-KIAA0196-4:2
5.0 lnc-KIAA0196-4:2
5.1 lnc-WASHC5-19:2
5.2 lnc-WASHC5-4:3