Transcript: LINC01957:3

Basic information

LNCipedia transcript ID: LINC01957:3 
HGNC Gene Symbol: LINC01957    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1957
Ensembl Gene ID: ENSG00000251542
Ensembl Transcript ID: ENST00000506392
RefSeq ID: NR_134282
Location (hg38): chr5:114576041-114579970
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 751 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009487; ENST00000506392; ENST00000506392.1; CTC-313D10.1-001; OTTHUMT00000370917.1; NONHSAT103282; NR_134282.1
Alternative gene names: XLOC_004512; linc-AP3S1-4; ENSG00000251542; CTC-313D10.1; ENSG00000251542.1; OTTHUMG00000162872.1; LINC01957; LOC101927059


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -163.5382 non-coding 
CPAT coding probability 1.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01957:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNN2-1:1
3.1 lnc-KCNN2-1:1
4.0 lnc-KCNN2-1:1
4.1 lnc-KCNN2-1:1
5.0 lnc-KCNN2-1:1
5.1 LINC01957:2
5.2 LINC01957:3