Transcript: lnc-KBTBD8-1:1

Basic information

LNCipedia transcript ID: lnc-KBTBD8-1:1 
LNCipedia gene ID: lnc-KBTBD8-1
Ensembl Gene ID: ENSG00000241884
Ensembl Transcript ID: ENST00000484222
Location (hg38): chr3:67296300-67306359
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2084 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005535; ENST00000484222; ENST00000484222.1; RP11-85I21.1-001; OTTHUMT00000351997.1; NONHSAT090316
Alternative gene names: XLOC_002691; linc-FAM19A1-2; ENSG00000241884; RP11-85I21.1; ENSG00000241884.1; OTTHUMG00000158741.1; ENSG00000241884.2; AC114401.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.5103 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KBTBD8-1:1 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KBTBD8-1:1
3.1 lnc-KBTBD8-1:1
4.0 lnc-KBTBD8-1:1
4.1 lnc-KBTBD8-1:1
5.0 lnc-KBTBD8-1:1
5.1 lnc-KBTBD8-1:1
5.2 lnc-KBTBD8-1:1