Transcript: lnc-JCHAIN-1:3

Basic information

LNCipedia transcript ID: lnc-JCHAIN-1:3 
LNCipedia gene ID: lnc-JCHAIN-1
Ensembl Gene ID: ENSG00000272986
Ensembl Transcript ID: ENST00000609599
Location (hg38): chr4:70703747-70704491
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 745 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609599.1
Alternative gene names: ENSG00000272986.1; RP11-46J23.1; AC009570.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -234.9011 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JCHAIN-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IGJ-1:2
4.0 lnc-IGJ-1:2
4.1 lnc-IGJ-1:2
5.0 lnc-IGJ-1:2
5.1 lnc-CENPC-50:3
5.2 lnc-JCHAIN-1:3