Transcript: LCAL1:4

Basic information

LNCipedia transcript ID: LCAL1:4 
HGNC Gene Symbol: LCAL1    
HGNC Full Gene Name: lung cancer associated lncRNA 1
RefSeq ID: NR_130915
Location (hg38): chr6:79307669-79313384
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3885 bp
Exons: 3
Sources: NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT113685; NR_130915.1
Alternative gene names: LCAL1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.2655 non-coding 
CPAT coding probability 79.15% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LCAL1:4 no no no no

Available literature

  1. Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
  2. White (2014), Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMGN3-3:1
4.0 lnc-HMGN3-3:1
4.1 lnc-HMGN3-3:1
5.0 lnc-HMGN3-3:1
5.1 LCAL1:2
5.2 LCAL1:4