Transcript: lnc-HMG20A-2:1

Basic information

LNCipedia transcript ID: lnc-HMG20A-2:1 
LNCipedia gene ID: lnc-HMG20A-2
Location (hg38): chr15:77568970-77572864
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 702 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000560590.1; RP11-307C19.2-002; OTTHUMT00000419531.1; NONHSAT047448
Alternative gene names: ENSG00000259420.1; RP11-307C19.2; OTTHUMG00000172611.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -417.209 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMG20A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMG20A-2:1
4.0 lnc-HMG20A-2:1
4.1 lnc-HMG20A-2:1
5.0 lnc-HMG20A-2:1
5.1 lnc-PSTPIP1-5:1
5.2 lnc-HMG20A-2:1