Transcript: lnc-HHIP-1:2

Basic information

LNCipedia transcript ID: lnc-HHIP-1:2 
LNCipedia gene ID: lnc-HHIP-1
Location (hg38): chr4:144851572-144874786
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2806 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00007406
Alternative gene names: XLOC_003718; linc-ABCE1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.2497 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HHIP-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HHIP-1:1
3.1 lnc-HHIP-1:2
4.0 lnc-HHIP-1:2
4.1 lnc-HHIP-1:2
5.0 lnc-HHIP-1:2
5.1 lnc-SMAD1-6:1
5.2 lnc-HHIP-1:2