Transcript: lnc-HDAC9-2:2

Basic information

LNCipedia transcript ID: lnc-HDAC9-2:2 
LNCipedia gene ID: lnc-HDAC9-2
Ensembl Gene ID: ENSG00000232821
Ensembl Transcript ID: ENST00000419944
Location (hg38): chr7:19112474-19114271
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1711 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419944.1; AC003986.6-001; OTTHUMT00000326462.1; NONHSAT119379
Alternative gene names: ENSG00000232821.1; AC003986.6; OTTHUMG00000152496.1; AC003986.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.5907 non-coding 
CPAT coding probability 9.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDAC9-2:2 yes no no no

Available literature

  1. Li (2015), Genome-wide DNA methylome analysis reveals epigenetically dysregulated non-coding RNAs in human breast cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDAC9-2:2
4.0 lnc-HDAC9-2:2
4.1 lnc-HDAC9-2:2
5.0 lnc-HDAC9-2:2
5.1 lnc-AHR-19:2
5.2 lnc-HDAC9-2:2